Protein Info for Echvi_0139 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Outer membrane protein transport protein (OMPP1/FadL/TodX).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUJ9 at UniProt or InterPro

Protein Sequence (491 amino acids)

>Echvi_0139 Outer membrane protein transport protein (OMPP1/FadL/TodX). (Echinicola vietnamensis KMM 6221, DSM 17526)
MGIGFLLGASSITPTLAQTLEDALRYSQYNATGSARIMGIGGSQFAIGGDVSNISGNPAG
LGFFRKSEFSFTPSYGNWKSTSSFMDQPQEDHKGNFALPNVGIVMAKVKDPLNQDAWRGH
SFGISFNRTRNFNNTFGYYSNIGSPTSLLDYYADDYNMYGEPAVGDPAGLPLDVGLVIKE
GNTFYPSDYTYNPNEDGSPNFDSPIAPFQDELIENEGNLSQITFAYGGNYKNKLFIGGSV
GITSINFSSRKIYNEEFIDESGNTSTYFSLAENLYHSGAGVNLNLGVIYKPIDQINIGAS
FSSPTWARYDEEYDSDIYAEFYDLNGNLQSDDNAFSDIYVSSINLTTPMKLSGGLAFFIN
KNGFITADVDYLNYASMNLSSSDYRLNAANENIDATMGNVINYRVGGEWRINMFRLRAGT
ALYGDPYKDSEFDRSRTQFTGGVGVKLPNMYVDLGIVHNQFDTYYSSYPGAELTTTDNSN
TQGLLTLGFNF