Protein Info for Echvi_0090 in Echinicola vietnamensis KMM 6221, DSM 17526
Annotation: Iron-sulfur cluster assembly accessory protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 50% identical to ERPA_HAES1: Iron-sulfur cluster insertion protein ErpA (erpA) from Haemophilus somnus (strain 129Pt)
KEGG orthology group: K13628, iron-sulfur cluster assembly protein (inferred from 76% identity to mtt:Ftrac_1573)MetaCyc: 53% identical to iron-sulfur cluster insertion protein IscA (Escherichia coli K-12 substr. MG1655)
Predicted SEED Role
"probable iron binding protein from the HesB_IscA_SufA family"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See L0FSW3 at UniProt or InterPro
Protein Sequence (108 amino acids)
>Echvi_0090 Iron-sulfur cluster assembly accessory protein (Echinicola vietnamensis KMM 6221, DSM 17526) MIIVSDQAKERIKELRQEEGRKESENIRVSVKGGGCSGLMYDLGFDESITDSDQVFEDKG VKIVVDKKSLLYLAGTTLEFSDGLNGKGFQFVNPNASRTCGCGESFSI