Protein Info for Echvi_0086 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Glycosyltransferases, probably involved in cell wall biogenesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 285 to 318 (34 residues), see Phobius details amino acids 339 to 363 (25 residues), see Phobius details PF13506: Glyco_transf_21" amino acids 18 to 338 (321 residues), 38.4 bits, see alignment E=1.4e-13 PF10111: Glyco_tranf_2_2" amino acids 45 to 226 (182 residues), 27.4 bits, see alignment E=4.7e-10 PF00535: Glycos_transf_2" amino acids 46 to 210 (165 residues), 88 bits, see alignment E=1.4e-28 PF13632: Glyco_trans_2_3" amino acids 126 to 327 (202 residues), 35.5 bits, see alignment E=1.9e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FTL3 at UniProt or InterPro

Protein Sequence (372 amino acids)

>Echvi_0086 Glycosyltransferases, probably involved in cell wall biogenesis (Echinicola vietnamensis KMM 6221, DSM 17526)
MNLLPILLFAALLVYLLSLAILSSKWKWRRAKNERIQGGVDYPVTLLVPFRNEKKNLPGL
LRNLAGLSYPNLQIILIDDHSEDGGGDQVEAWILAENKHNFKLISGQGQGKKAAIEQGVV
MANANIILTTDADCTLSADWVQNMLRAFDDPSVQMVAGPVMTKGGDGTFDHFQQIDWASI
LLMTNFFFSIKKPVMCSAANMGYRKEAFYHIKGYQGNHGNPSGDDSYLLEKIYQRFGHQA
IRYLASSNVLVKTHPVGSISGFLEQRSRWASKWNKHQFWQNAGGAVLSAFLSLASICSIL
LLLTGPIGVAMFAVYWFLKLLFEYFVLRKVLNTYEIPLSVGNLFLASVLHPIYVILVAFR
SFLVKSRWKGRK