Protein Info for Echvi_0055 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Predicted Zn-dependent peptidases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 PF00675: Peptidase_M16" amino acids 14 to 160 (147 residues), 126.2 bits, see alignment E=1e-40 PF05193: Peptidase_M16_C" amino acids 166 to 341 (176 residues), 102.2 bits, see alignment E=3.2e-33

Best Hits

KEGG orthology group: None (inferred from 58% identity to mtt:Ftrac_3571)

Predicted SEED Role

"FIG007959: peptidase, M16 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FTI7 at UniProt or InterPro

Protein Sequence (409 amino acids)

>Echvi_0055 Predicted Zn-dependent peptidases (Echinicola vietnamensis KMM 6221, DSM 17526)
MSYNIKALPNGIRIVHQEVTHTRLVHCGFILDIGSRDETKEQAGLAHFWEHMAFKGTQKR
KSFHILNRLESVGGELNAYTTKEKICFYSSILKEHFNKAAELLYDITFHSTFPVKQIEKE
RQVILEEMAMYRDSPDDAIQDEFDEVVFQNHSLGRNILGTEDTVGSFTQNDFFDFISTRM
DTSKIVFSVVGNISFKKVLRQLEPKLNQIPSKKSLYQRSDFRHYQPKTETIYKEISQAHC
AIGKPAYSLYHPDRYKLYLLNNILGGPSMNSRLNLALREKYGYVYSVESAYQVYKDTGFI
GIFYGTEEKTFKKAQKLVLRELKRLREKKLGTMQLHMAKEQAIGQMAMAEENHAALMLVF
GKSLLDKGRIDSLDHIFSLIRNTTSEELQHIANEMFREDELSFLTYLPH