Protein Info for Echvi_0054 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Glycosyltransferases, probably involved in cell wall biogenesis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 279 PF13641: Glyco_tranf_2_3" amino acids 12 to 221 (210 residues), 55.7 bits, see alignment E=1.3e-18 PF00535: Glycos_transf_2" amino acids 13 to 130 (118 residues), 68.1 bits, see alignment E=1.9e-22 PF10111: Glyco_tranf_2_2" amino acids 14 to 225 (212 residues), 28.8 bits, see alignment E=1.8e-10 PF02709: Glyco_transf_7C" amino acids 186 to 247 (62 residues), 24.9 bits, see alignment E=2.6e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FST6 at UniProt or InterPro

Protein Sequence (279 amino acids)

>Echvi_0054 Glycosyltransferases, probably involved in cell wall biogenesis (Echinicola vietnamensis KMM 6221, DSM 17526)
MMHTIKDELKATLIISVYKNTTFLKAVLDSLAGQTDNRFEVIISEDGNADEMRDFVQGYS
FSHPVQHLSREDKGWQKNQALNEAIRAANTDWLVFIDGDCVLHPRFMEFHIQKAKPDTIL
AGKRIKLDPETSQLLLEGTVNPTEMNAYLRKHFKKIKERGGEFVEEGFFISPNGLVGRVM
GTRKMRHLKGCNMSFHKEAIYAINGFDEAYTRPAVGEDADLLWRFKGIGYQLGSVRNLAV
QYHLYHKESWTDQEENLRIMQDNMAAKKFVCKQGLVKNK