Protein Info for Echvi_0038 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Putative regulator of cell autolysis

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 44 to 62 (19 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details PF06580: His_kinase" amino acids 156 to 235 (80 residues), 83.6 bits, see alignment E=4.9e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FUA7 at UniProt or InterPro

Protein Sequence (347 amino acids)

>Echvi_0038 Putative regulator of cell autolysis (Echinicola vietnamensis KMM 6221, DSM 17526)
MVSRLLKTSYGWVRLILILAILGSVNAFLLVNYGVDLGVSLVDSLLYVLLTFSGVMLLEN
IFRFYQPKKNNSWLWVAVPVVLGIALVFLGEFALERLMKSKTDYLLFLKEVRLVRGFFVL
LLFGAYTGLLIVGGLLEDQLEARKRAEMIDKLSKEAELYHLRQQLQPHFLFNSLNSISAL
VKRQPDKAREMVLQLSEFLRGTIRKNQLEWVSVEEEVMYLRLFMAIEMVRFGHRLKVDFT
VSEEAETMTLPSLLIQPLLENAVKHGVYGRTDEVFIKLAIQLHGSYLNVMISNPYDPSAA
NSNGKGFGLESVKRRMYLLFGRHDLLVVDKNASLFTVNLNIPIGKRA