Protein Info for Echvi_0014 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1145 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 743 to 764 (22 residues), see Phobius details PF07494: Reg_prop" amino acids 34 to 54 (21 residues), 16 bits, see alignment (E = 3.2e-06) PF07495: Y_Y_Y" amino acids 675 to 718 (44 residues), 42 bits, see alignment (E = 2.2e-14) TIGR00229: PAS domain S-box protein" amino acids 787 to 909 (123 residues), 40.7 bits, see alignment E=1.2e-14 PF00989: PAS" amino acids 790 to 900 (111 residues), 27.2 bits, see alignment E=9.9e-10 PF13426: PAS_9" amino acids 800 to 902 (103 residues), 26.6 bits, see alignment E=1.8e-09 PF00512: HisKA" amino acids 924 to 988 (65 residues), 55 bits, see alignment 2.1e-18 PF02518: HATPase_c" amino acids 1037 to 1144 (108 residues), 83.9 bits, see alignment E=3.5e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0FTE3 at UniProt or InterPro

Protein Sequence (1145 amino acids)

>Echvi_0014 PAS domain S-box (Echinicola vietnamensis KMM 6221, DSM 17526)
MPRIIIILYILFLLKGTLMAQSFQMNKQIKGVDLPSQIVSTIDQDKDGRIWFTTAKGVFY
SDGISTYGLPEELSDNLNGSEGVEVDDDGQVWVYAKKGKPRIYKLIENDWDEYPIEDSVK
SILESSKMKLYVSGGKENKLLVLSGPEVFASSLEASGNWTAYSYDEEEWGGLKSVFCCTA
DSVLFLFGKRTVRLSKGKFIPFVFHNADLPGPVWMVRYSQFDDKFYFLGDDYLAMGNSLF
EIENVLDQGFSRINYQFSQKFGLQTKQGGVYYFFNSQLYKYNLDNGKIIEISTYDALKSF
YITTSFVDRENIIWIGTERGVVNLPTLRFQNYSKWEGLMEHEVSAVLTLGAEEILYGFNN
GIQHWKNGELIFESKSAGQEGEPKNRITTFHVDQKGVVWMSSAMKGLGRYDPASRSLSYV
QAPDRSFVMHAIPKGDSLIIVSKTHIYLSSIHQRGSDHFKNEITQYLFDELLGMSINEVR
KVEFTSEGRMVIMAGGWKDLQDKVFNNDEVLAFSGYDWIRYKEGYLLATYDGLKYYDGDR
IVPYTLNGQKVDRPVYAVIADGKGNIWAGTDEGVAIIGNGIIRYFNEHNGLVGNEVNRGA
FTMDEQGRVHIGTQNGLSVFIPEEDDEIFVEPQVDVTSLKVLGVDDSRKISYDKIPYELN
NVEFEFSAISFLQSANFTVSYMLEGFHDDWQHVQNPRTNKLYFNNLPPGDYQLKVKASLG
GQFSSGIASSERFSIIKPTYLQSWFIGALILFLLMLGFGLNVLITQFKEQGVLQKSIAEK
NQEIKTAEDQFKNVWESSQDGFMLLNLKGDVLAVNPSMIKLAGMEEYRQFTGRHIKEFFK
KPDYYFEHKDLILSLLSKSESGSMEAYMPFHSGYKNIELFVTKVNPEKNDDVVLMVFRDV
TDKKVYEEGLKEAKERAEEANRIKTNFLSNMSHEIRTPLNGILGSTENIIIQNKDNHLLV
GQLEIIMESGERLLNTINSILSMAKIEANKMEVDYEETNINDFLSHLLIPLKTLAMKKNL
LLTARFATKPFVARVDKRYFEMIVNNIVGNAIKYSDEGLIKVLLKQVDDKIHFEVKDSGI
GMSEEFVQKLYAPFEQESVGYDRQFEGTGLGLSITKNLVEILNGTIEIKSKKNAGTTVLV
ILPVN