Protein Info for Echvi_0006 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF02630: SCO1-SenC" amino acids 58 to 191 (134 residues), 92.4 bits, see alignment E=1.2e-30

Best Hits

KEGG orthology group: None (inferred from 56% identity to sli:Slin_1301)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U3GLD9 at UniProt or InterPro

Protein Sequence (222 amino acids)

>Echvi_0006 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems (Echinicola vietnamensis KMM 6221, DSM 17526)
MVKHNLIILILFSSILMVWNCTSKSEDTKPLPYLGHKQTAEKTVDGKTVTDTVYHTIAPF
SFTDQDSATITNRDLNGKVYVADFFFTSCPTICPVMKTQMLRVYEKFKEHPDFQILSHSI
DPTHDTVAVLKEYSVRLGIEDASTWHFLTGDQEKIFEIGQTSYLATAMEDKNEPGGFLHS
GAFILIDRQGHIRGVYDGTKEDQVDQLIKDIPKLLDNGKKKS