Protein Info for EX28DRAFT_4368 in Enterobacter asburiae PDN3

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 39 to 64 (26 residues), see Phobius details amino acids 76 to 86 (11 residues), see Phobius details amino acids 102 to 120 (19 residues), see Phobius details amino acids 140 to 163 (24 residues), see Phobius details amino acids 180 to 200 (21 residues), see Phobius details amino acids 211 to 234 (24 residues), see Phobius details amino acids 240 to 266 (27 residues), see Phobius details TIGR00765: YihY family inner membrane protein" amino acids 18 to 274 (257 residues), 338.2 bits, see alignment E=2.2e-105 PF03631: Virul_fac_BrkB" amino acids 29 to 272 (244 residues), 206.3 bits, see alignment E=3.4e-65

Best Hits

Swiss-Prot: 89% identical to Y3126_CITK8: UPF0761 membrane protein CKO_03126 (CKO_03126) from Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)

KEGG orthology group: K07058, membrane protein (inferred from 97% identity to enc:ECL_05099)

Predicted SEED Role

"Inner membrane protein YihY, formerly thought to be RNase BN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (293 amino acids)

>EX28DRAFT_4368 Predicted membrane protein (Enterobacter asburiae PDN3)
MLKTVHQKATHHTRPLRAWLKLLWHRIDEDNMTTLAGNLAYVSLLSLVPLVAVIFALFSA
FPMFADVSLQLRHFVFANFIPATGDVIQNYIEQFVANSSKMTAVGACGLIVTALLLMYAI
DNALNTIWRSKKARPKVYSFAVYWMILTLGPLLAGASLAISSYLLSLRWASDLNGVIDNA
LRIFPLILSWLSFWLLYSVVPTTRVPNRDAVLGALVAALLFELGKKGFALYITMFPSYQL
IYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGVYRELKKAAEAEKQLEADQP