Protein Info for EX28DRAFT_4254 in Enterobacter asburiae PDN3

Annotation: ribonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00545: Ribonuclease" amino acids 67 to 152 (86 residues), 36.8 bits, see alignment E=2.6e-13

Best Hits

KEGG orthology group: None (inferred from 56% identity to bav:BAV2062)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (160 amino acids)

>EX28DRAFT_4254 ribonuclease (Enterobacter asburiae PDN3)
MKPLSIVKMAVLSVSLFTVLQATAAMPTCEEEIKEANAFLSSQGMVPVNNVTDLATTLRH
IKNFGRLPDRYITSDEAKRLGWSGSENESLWGVKLTNQKWIGGDKYSDRALPSSLLWLSA
DVDVVKGYRSPKRLIYSLSGQQRFITTDKYQHIVELDPCQ