Protein Info for EX28DRAFT_4239 in Enterobacter asburiae PDN3

Annotation: Permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 transmembrane" amino acids 29 to 49 (21 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 108 to 129 (22 residues), see Phobius details amino acids 141 to 165 (25 residues), see Phobius details amino acids 175 to 197 (23 residues), see Phobius details amino acids 205 to 230 (26 residues), see Phobius details amino acids 250 to 271 (22 residues), see Phobius details amino acids 304 to 321 (18 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details amino acids 355 to 378 (24 residues), see Phobius details amino acids 391 to 417 (27 residues), see Phobius details amino acids 428 to 448 (21 residues), see Phobius details PF00860: Xan_ur_permease" amino acids 26 to 409 (384 residues), 301.5 bits, see alignment E=3.8e-94

Best Hits

Swiss-Prot: 94% identical to GHXP_ECOLI: Guanine/hypoxanthine permease GhxP (ghxP) from Escherichia coli (strain K12)

KEGG orthology group: K06901, putative MFS transporter, AGZA family, xanthine/uracil permease (inferred from 98% identity to enc:ECL_00323)

MetaCyc: 94% identical to guanine/hypoxanthine transporter GhxP (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-562; TRANS-RXN0-578

Predicted SEED Role

"Guanine-hypoxanthine permease" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (449 amino acids)

>EX28DRAFT_4239 Permeases (Enterobacter asburiae PDN3)
MSTPSARTGGSLDAMFKISARGSTVRQEIVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAV
FVATCLVAGVGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVL
FTVISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGHFA
SFPVIMSLIGLAVIIGLEKLKVPGGILLTIIGVSVVGLIFDPTVHFSGIFAMPSLSDDKG
NSLIGSLDIVGALNPVILPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALT
TDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFMLILFLSPLSYLVPAY
ATAPALMYVGLLMLSNVAKIDFADFVDAMSGLITAVFIVLTCNIVTGIMIGFASLVIGRL
VSGEWRKLNVGTVIIAVALVAFYAGGWAI