Protein Info for EX28DRAFT_4063 in Enterobacter asburiae PDN3

Annotation: Zn-dependent oligopeptidases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 680 PF19310: TOP_N" amino acids 46 to 148 (103 residues), 94.5 bits, see alignment E=4.4e-31 PF01432: Peptidase_M3" amino acids 222 to 677 (456 residues), 591.2 bits, see alignment E=2.1e-181

Best Hits

Swiss-Prot: 95% identical to OPDA_ECOLI: Oligopeptidase A (prlC) from Escherichia coli (strain K12)

KEGG orthology group: K01414, oligopeptidase A [EC: 3.4.24.70] (inferred from 99% identity to enc:ECL_04915)

MetaCyc: 95% identical to oligopeptidase A (Escherichia coli K-12 substr. MG1655)
Oligopeptidase A. [EC: 3.4.24.70]

Predicted SEED Role

"Oligopeptidase A (EC 3.4.24.70)" in subsystem Protein degradation (EC 3.4.24.70)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.4.24.70

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (680 amino acids)

>EX28DRAFT_4063 Zn-dependent oligopeptidases (Enterobacter asburiae PDN3)
MTNPLLTPFSLPPFSKILPEHVVPAVTQSLDNCRAAVESVVAQGAPYTWENLCQPLAEVD
DVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQHEGLYKAYRDLRDGDHYA
ELNTAQKKSVDNALRDFELSGIGLPKEKQTRYGEIAARLSELGNQYSNNVLDATMGWTKL
ITDEAELAGMPESALAAAKAQAEAKEQDGFLLTLDIPSYLPVMTYCDNQALREEMYRAYS
TRASDQGPNAGKWDNSPVMAEILALRHELAQLLGFENYADKSLATKMAENPQQVLDFLTD
LAKRARPQGEKELAQLRAFAKAEFGVDELQPWDIAYYSEKQKQHLYSISDEQLRPYFPEN
KAVNGLFEVVKRIYGITAKERTDIDVWHPDVRFFELYDEKNELRGSFYLDLYARENKRGG
AWMDDCVGQMRKADGSLQKPVAYLTCNFNRPVSGKPALFTHDEVITLFHEFGHGLHHMLT
RIETAGVAGISGVPWDAVELPSQFMENWCWEPDALAFISGHYETGEPLPKELLDKMLAAK
NYQAAMFILRQLEFGLFDFRLHAEFSPEQGAKILETLAEIKKQVAVIPGPTWGRFPHAFS
HIFAGGYAAGYYSYLWADVLAADAFSRFEEEGIFNRETGQSFLDNILTRGGSEEPMVLFK
RFRGREPQLDAMLEHYGIKG