Protein Info for EX28DRAFT_4009 in Enterobacter asburiae PDN3

Annotation: ATP synthase, F1 gamma subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 TIGR01146: ATP synthase F1, gamma subunit" amino acids 1 to 287 (287 residues), 373.1 bits, see alignment E=6.1e-116 PF00231: ATP-synt" amino acids 4 to 287 (284 residues), 354.2 bits, see alignment E=3.6e-110

Best Hits

Swiss-Prot: 96% identical to ATPG_SALPC: ATP synthase gamma chain (atpG) from Salmonella paratyphi C (strain RKS4594)

KEGG orthology group: K02115, F-type H+-transporting ATPase subunit gamma [EC: 3.6.3.14] (inferred from 99% identity to enc:ECL_05148)

MetaCyc: 94% identical to ATP synthase F1 complex subunit gamma (Escherichia coli K-12 substr. MG1655)
ATPSYN-RXN [EC: 7.1.2.2]; RXN0-7041 [EC: 7.1.2.2]

Predicted SEED Role

"ATP synthase gamma chain (EC 3.6.3.14)" in subsystem F0F1-type ATP synthase (EC 3.6.3.14)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14 or 7.1.2.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (287 amino acids)

>EX28DRAFT_4009 ATP synthase, F1 gamma subunit (Enterobacter asburiae PDN3)
MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRPYAETMRKVIGHLANGN
LEYKHPYLEERDVKRVGYLVVSTDRGLCGGLNINLFKKLLADMKAWSEKGVQCDIAMIGS
KGVSFFNSVGGNIVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDRLYVVSNKFINTMS
QVPTLTQMLPLPASEDDELKQKAWDYLYEPDPKPLLDTLLRRYVESQVYQGVVENLASEQ
AARMVAMKAATDNGGSLIKELQLVYNKARQASITQELTEIVSGAAAV