Protein Info for EX28DRAFT_3948 in Enterobacter asburiae PDN3

Annotation: KAP family P-loop domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 transmembrane" amino acids 344 to 363 (20 residues), see Phobius details PF07693: KAP_NTPase" amino acids 26 to 283 (258 residues), 85.4 bits, see alignment E=2e-28

Best Hits

Predicted SEED Role

"Putative phage protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (508 amino acids)

>EX28DRAFT_3948 KAP family P-loop domain (Enterobacter asburiae PDN3)
MTKHSELPFNWCEQVEDLPPDTLERSEYARFLTSFLVDKGINDNYVLNLDAQWGAGKTWF
IRRWMHEISSIYPTVYIDAWKNDHSGDPFLTVVSEIKSALTTKTELSVLENNVIKGTWRL
MKSIAPEVTKCFIKNKLGIDTEDLDLDAEADLGSKIVDELLKSHEQANSSAENFKRSIHE
WLEAVIDTNEGKYAYPLFIFIDELDRCRPNYAIDMLETIKHLFDIRNVVFVIATDKEQLI
HSICSVYGSGFDARRYLDRFFMRSVTLQKRSLFDFISKKVNHSVSFNKTIKNRDIIIHDT
QNPKITIAVDVLTTIADGFSMDLRTANLWLERLESIYSYTNRNIELISLAFLLAIYTLHT
PYYKSMQSGMDLFSTESKEPISKVFKPLSSFTVQTSTKDISLNSSSLMPYPIHEFLFSEK
INPLHLIIIIINQFGKVHNHQSKKDKILREIYSSPSDYEKLKKEIYYLHGGQFTINQATN
IYIDKYYEENPITLKDYNELCELAMLME