Protein Info for EX28DRAFT_3943 in Enterobacter asburiae PDN3

Annotation: Predicted permease, DMT superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 41 to 59 (19 residues), see Phobius details amino acids 72 to 93 (22 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 126 to 145 (20 residues), see Phobius details amino acids 152 to 173 (22 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 217 to 237 (21 residues), see Phobius details amino acids 249 to 270 (22 residues), see Phobius details amino acids 276 to 293 (18 residues), see Phobius details PF00892: EamA" amino acids 6 to 144 (139 residues), 67.3 bits, see alignment E=8.3e-23 amino acids 158 to 291 (134 residues), 81.3 bits, see alignment E=3.9e-27

Best Hits

Swiss-Prot: 85% identical to YICL_ECOLI: Uncharacterized inner membrane transporter YicL (yicL) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 96% identity to enc:ECL_00045)

Predicted SEED Role

"FIG00626560: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>EX28DRAFT_3943 Predicted permease, DMT superfamily (Enterobacter asburiae PDN3)
MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEKSHISSPYLTMVRLLFTGVILLTLSFVHGD
KIFSVIKHRKDALSLLIFSLVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFALA
RKKRPGVFVLSAIMTSLVGTFLLVTHGDPTSLSISPAALFFGIASAFAAAFYTTYPSTLI
ARYGTLPIVGWSMLIAGLMLTPFYAGRGTTFVIDGSLLLAFFYLVVIGTALTFSLYLKGA
QMIGGPKASILSCAEPLSSALLSVILLGVAFTLPDWLGTLLIVSSVVLISMDSRRRVQTS
A