Protein Info for EX28DRAFT_3919 in Enterobacter asburiae PDN3

Annotation: P pilus assembly protein, porin PapC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 841 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13954: PapC_N" amino acids 26 to 171 (146 residues), 123.8 bits, see alignment E=8.6e-40 PF00577: Usher" amino acids 190 to 751 (562 residues), 621.6 bits, see alignment E=2.3e-190 PF13953: PapC_C" amino acids 764 to 823 (60 residues), 61.4 bits, see alignment 9.2e-21

Best Hits

KEGG orthology group: None (inferred from 91% identity to enc:ECL_00091)

Predicted SEED Role

"Outer membrane usher protein fimD precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (841 amino acids)

>EX28DRAFT_3919 P pilus assembly protein, porin PapC (Enterobacter asburiae PDN3)
MKIKILCATVISLVIRQAVAAESELQFNPAFLNGESANSADLAWVNAGSALPPGDYNLNV
YINTNYAFTGNVTFRLAEDSTGEALPCLTPEQFAALGINSHQAKGGALPLAQRCIFLTKA
FADTQFDLDQKTLTLSFTVPQSAMRNLPRGYVSPESWEAGIPAAWLNYVVNGSNNEYRGE
TRTREQQLFASLNSGVNLGAWRLRDFTTWTKDSNELTHVQTWLQRDIHALRAQVYAGETY
TSAQVFDSVGLRGIALKTDDNMLPASLSGYAPEVRGIARSNATVTVRQNGNIIYQTSVPP
GAFVLKDLYPTSSGGDLAVTIQENDGSKTQYTLPFASVPNLVRNGQVKYALGAGKYRPTG
NQDAPSFAQGELFYGWRYGLTFYGGAQFADRYNGLALGFGQNLGRFGAYSIDLTHARSQL
ADDRHYSGDSVRLRYSKQLSDIGTRVNFFSLRYSTKGFYTLSDTTYKGMSGGSPKQTVED
DGTVTTQYDTVYNLRMSRKAKNQLLLSQPMGQYGSLTLSWDQQTYWNTSNTTQSLQFAWN
ATFRNVSLGVSVQRSSSLYDDKKDNILSMSISVPLGNPTLSTRARFTTTHADSTGTTAST
GVSGYLPGQENLFYSVNQRYSAQQHYGGDATLQYEGAWGDYNLGYSYASDSRNLSYGISG
GAVVHEDGLTLSQPLGNTNILVKAPGASSVAVLNHKGIKTDSRGYAVIPYATPYRVNQVA
LDVTTAGNDVELENAIANKTPTDGALVRATFTTHQGAKAMFIVRHGNDVLPFGTLVSIDD
DKTSGIVGDGGSLYLSGLSEKGTLNAVWGRGSRQRCAITYALNKQHFNARTGLYSQEVVC
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