Protein Info for EX28DRAFT_3906 in Enterobacter asburiae PDN3

Annotation: sugar (Glycoside-Pentoside-Hexuronide) transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 transmembrane" amino acids 30 to 55 (26 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 110 to 136 (27 residues), see Phobius details amino acids 149 to 172 (24 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details amino acids 264 to 282 (19 residues), see Phobius details amino acids 294 to 312 (19 residues), see Phobius details amino acids 318 to 340 (23 residues), see Phobius details amino acids 361 to 384 (24 residues), see Phobius details amino acids 400 to 423 (24 residues), see Phobius details TIGR00792: sugar (Glycoside-Pentoside-Hexuronide) transporter" amino acids 10 to 443 (434 residues), 495.4 bits, see alignment E=6.6e-153 PF13347: MFS_2" amino acids 12 to 426 (415 residues), 301.3 bits, see alignment E=4.8e-94

Best Hits

Swiss-Prot: 86% identical to YICJ_ECOLI: Inner membrane symporter YicJ (yicJ) from Escherichia coli (strain K12)

KEGG orthology group: K03292, glycoside/pentoside/hexuronide:cation symporter, GPH family (inferred from 96% identity to ent:Ent638_0070)

Predicted SEED Role

"Xyloside transporter XynT" in subsystem Xylose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (463 amino acids)

>EX28DRAFT_3906 sugar (Glycoside-Pentoside-Hexuronide) transporter (Enterobacter asburiae PDN3)
MSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAIS
DPCMGLIADRTRSRWGKFRPWILFGAIPFGIVCVLAYTTPDLSLNGKMVYAAVTYTLLTL
LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATTGGMLSTVLMMPLVNLIGGDDKAFG
FQGGIAVLSVVAFLMLAFCFFTTKERIQVPPSTTSMREDLRDIWHNDQWRIVGVLTILNI
LAVCVRGGAMMYYCTWIMGSPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSIFWWTNA
ALAVVSVAMFFVPMHATVLMFAFIFVIGVLHQLVTPIQWVMMSDTVDYGEWTNGKRLTGI
SFAGTLFVLKLGLALGGAMIGWMLAGGGYDAAAKTQNSATISIIIGLFTLAPAVCYVLSA
IIAKRYYTLKTPFLTKILGELAQGARRNQQEFEKLPVSKELQN