Protein Info for EX28DRAFT_3894 in Enterobacter asburiae PDN3

Annotation: TIGR00255 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 TIGR00255: TIGR00255 family protein" amino acids 1 to 287 (287 residues), 447 bits, see alignment E=1.9e-138 PF03755: YicC-like_N" amino acids 2 to 153 (152 residues), 155.1 bits, see alignment E=2e-49 PF08340: YicC-like_C" amino acids 171 to 287 (117 residues), 133 bits, see alignment E=6e-43

Best Hits

Swiss-Prot: 94% identical to YICC_ECOLI: UPF0701 protein YicC (yicC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to enc:ECL_00117)

Predicted SEED Role

"Protein YicC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (287 amino acids)

>EX28DRAFT_3894 TIGR00255 family protein (Enterobacter asburiae PDN3)
MIRSMTAYARREIKGSWGSATWEMRSVNQRYLETYFRMPEQFRSLEPVVRERIRTRLTRG
KVECNLRFEPDASAQGELILNEKLAKQLVNAANWVKMQSDEGEINPVDILRWPGVMAAGE
QDLDAIAAEILAALDGTLDDFIVARETEGQALKAMIEQRLEGVSTEVAKVRTHMPEVLQW
QRERLVAKLEEAEVQLENTRLEQELVLMAQRIDVAEELDRLEAHVKETYNILKKKEAVGR
RLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLIEQMREQIQNIE