Protein Info for EX28DRAFT_3880 in Enterobacter asburiae PDN3

Annotation: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 PF13579: Glyco_trans_4_4" amino acids 13 to 178 (166 residues), 35.7 bits, see alignment E=2.2e-12 PF13439: Glyco_transf_4" amino acids 13 to 182 (170 residues), 61.8 bits, see alignment E=1.7e-20 PF00534: Glycos_transf_1" amino acids 196 to 333 (138 residues), 82.9 bits, see alignment E=4.2e-27 PF13692: Glyco_trans_1_4" amino acids 200 to 334 (135 residues), 71.9 bits, see alignment E=1.4e-23

Best Hits

KEGG orthology group: None (inferred from 92% identity to enc:ECL_00131)

Predicted SEED Role

"Lipopolysaccharide core biosynthesis glycosyl transferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (366 amino acids)

>EX28DRAFT_3880 Glycosyltransferase (Enterobacter asburiae PDN3)
MRILMIIDGLPGGGAEKTVLTLSRGLIEMGHQVSLFSLRKVCDYAIPEGIDYQVVQDTCK
KPWRKLTEIPRRAQLLDQAIERAERSGKFDVVFSHLHKTDRIVAHCRALERDKVWFCVHG
MFSFSYLRHRSGLSRWFKHLKIRHTYENRNVVAVSGAVLKDLSETLALNLRRKAVIHNPF
DIPEIQRLADAPFEMQGKDYIIHVGRFHEHKRHDRLLRAFALSKIDTTLVMMGNGSDAQI
RKLKQLAAELGIENKTVFRPFDSNPYPWIKGARLLVLSSDCEGFGNVLVEAIICQTPPVS
TNCPGGPAEILTGALARGLAELNDASLAKTLADIYTAPPVVGDATIASFGINAICQQYIA
LVDNQK