Protein Info for EX28DRAFT_3847 in Enterobacter asburiae PDN3

Annotation: Multidrug resistance efflux pump

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 signal peptide" amino acids 1 to 6 (6 residues), see Phobius details transmembrane" amino acids 7 to 22 (16 residues), see Phobius details amino acids 28 to 49 (22 residues), see Phobius details PF00529: CusB_dom_1" amino acids 18 to 367 (350 residues), 37 bits, see alignment E=5.4e-13 PF13533: Biotin_lipoyl_2" amino acids 64 to 110 (47 residues), 39.6 bits, see alignment 7e-14 PF16576: HlyD_D23" amino acids 66 to 301 (236 residues), 35.2 bits, see alignment E=1.6e-12

Best Hits

Swiss-Prot: 89% identical to YIBH_ECO57: Inner membrane protein YibH (yibH) from Escherichia coli O157:H7

KEGG orthology group: None (inferred from 95% identity to sea:SeAg_B3899)

Predicted SEED Role

"Membrane fusion component of tripartite multidrug resistance system" in subsystem Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (378 amino acids)

>EX28DRAFT_3847 Multidrug resistance efflux pump (Enterobacter asburiae PDN3)
MDLLIILTYVAFAWVIFKIFRIPVNQWTLATATLGGVFIVAGLILLMNYNHPYTFTAQKA
VISIPITPQVTGVVSEVTDKNNQLIKKGEVLFKLDPGRYQARVDRLQADLVTATHNIDNL
KAQLVEAVANTTRVSAERDRLYKDYQRYLKGSQAKVNPFSESDIDNARQNYLAQDALVKG
SVAEQTQIQSQLDSMVNGEQSQIASLRAQLAEAKYNLDQTVVRAPSDGYITQVLIRPGTY
AAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDEAEVVFNALPGQVFSGKLTAILPV
VPGGSYQAQGALQSLTVVPGTDGVLGTIELDPNAEVDALPDGIYAQVAVYSDHFAHVSVM
RKVLLRMTSWMHYLYLDH