Protein Info for EX28DRAFT_3752 in Enterobacter asburiae PDN3

Annotation: Protein of unknown function (DUF3461)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 PF11944: DUF3461" amino acids 1 to 125 (125 residues), 188.7 bits, see alignment E=1.9e-60

Best Hits

Swiss-Prot: 98% identical to Y4555_KLEP3: UPF0325 protein KPK_4555 (KPK_4555) from Klebsiella pneumoniae (strain 342)

KEGG orthology group: None (inferred from 97% identity to ebd:ECBD_3455)

Predicted SEED Role

"UPF0325 protein YaeH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (128 amino acids)

>EX28DRAFT_3752 Protein of unknown function (DUF3461) (Enterobacter asburiae PDN3)
MYDNLKSLGITNPDEIDRYSLRQEANNDILKIYFHKDKGEFFAKSVKFKYPRQRKTVVAD
GVGQGYKEVQEISPNLRYVIDELDQICQRDRTEVDLKRKILDDLRHLESVVTNKISEIEA
DLEKLTRK