Protein Info for EX28DRAFT_3747 in Enterobacter asburiae PDN3

Annotation: ABC-type Fe3+-hydroxamate transport system, periplasmic component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01497: Peripla_BP_2" amino acids 26 to 228 (203 residues), 75.9 bits, see alignment E=1.7e-25

Best Hits

Swiss-Prot: 79% identical to BTUF_SALPA: Vitamin B12-binding protein (btuF) from Salmonella paratyphi A (strain ATCC 9150 / SARB42)

KEGG orthology group: K06858, vitamin B12 transport system substrate-binding protein (inferred from 92% identity to enc:ECL_00962)

MetaCyc: 78% identical to vitamin B12 ABC transporter periplasmic binding protein (Escherichia coli K-12 substr. MG1655)
ABC-5-RXN [EC: 7.6.2.8]; 7.6.2.8 [EC: 7.6.2.8]

Predicted SEED Role

"Vitamin B12 ABC transporter, B12-binding component BtuF" in subsystem Coenzyme B12 biosynthesis

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>EX28DRAFT_3747 ABC-type Fe3+-hydroxamate transport system, periplasmic component (Enterobacter asburiae PDN3)
MAKHTVRALAALLLLAPLWLYAVPRVITLSPANTELAFAAGITPVGVSSFSDYPPQAAGI
EQVATWQGMNLERIVALKPDLVLAWRGGNAERQVNQLTSLGIKVMWIDAVSIEQVAQALR
DLAPYSPTPKKAEAAAKQMLSDYAALKSQYDTPVKKRIFLQFGSQPLFTTGKGSIQNQVL
EVCGGENIFAASRVPWPQVSREQVLARQPQAIVVVGNASEIPKIEQFWQKQLKIPVIPLN
SDWFERASPRIILAAKQLCAALAESH