Protein Info for EX28DRAFT_3693 in Enterobacter asburiae PDN3

Annotation: preprotein translocase, SecA subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 901 PF07517: SecA_DEAD" amino acids 7 to 401 (395 residues), 433.5 bits, see alignment E=1.1e-133 TIGR00963: preprotein translocase, SecA subunit" amino acids 28 to 817 (790 residues), 1152.2 bits, see alignment E=0 PF00270: DEAD" amino acids 95 to 215 (121 residues), 25.9 bits, see alignment E=2.3e-09 PF01043: SecA_PP_bind" amino acids 232 to 358 (127 residues), 140.2 bits, see alignment E=1.2e-44 PF21090: P-loop_SecA" amino acids 417 to 614 (198 residues), 305.9 bits, see alignment E=3.9e-95 PF07516: SecA_SW" amino acids 617 to 830 (214 residues), 247.7 bits, see alignment E=3.2e-77 PF02810: SEC-C" amino acids 881 to 899 (19 residues), 40.5 bits, see alignment (E = 6.1e-14)

Best Hits

Swiss-Prot: 73% identical to SECA_AERHH: Protein translocase subunit SecA (secA) from Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240)

KEGG orthology group: K03070, preprotein translocase subunit SecA (inferred from 73% identity to aha:AHA_3877)

Predicted SEED Role

"Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (901 amino acids)

>EX28DRAFT_3693 preprotein translocase, SecA subunit (Enterobacter asburiae PDN3)
MLIKLLTKVFGSRNDRTLRRMRKAVAVINGMEPAMEKLSDDELKAKTAEFRARLEKGETL
ESLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA
LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGMTVGINMSGLPAPAKREAYNADITYGTNN
EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYRKVD
KIIPHLLRQEKEDSDTFQGEGHFSVDEKARQVNLTERGLVKIEELLVAEGIMEEGESLYS
PTNIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK
EGVDIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR
KDMPDLVYMTEAEKIQAIIEDIRDRTANGQPVLVGTISIEKSEVVSHELTKAGIKHNVLN
AKFHAKEADIVAQAGYPAAVTIATNMAGRGTDIMLGGSWQAEVAELENPTPEQIAQIKAD
WQVRHDAVLASGGLHIIGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDALMRIFAS
DRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIY
TQRNELLDVSDVSETINSIREDVFKATIDAHIPPQSLEEMWDIEGLQERLKNDFDLDLPI
KEWLDKEPELHEETLRERIFETALDVYKRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLA
AMDYLRQGIHLRGYAQKDPKQEYKRESFSMFASMLESLKYEVISTLSKVQVRMPEEVEAM
EQQRREEAERLAQMQQLSHQTEDSEAAAAIAAQTGDRKVGRNDPCPCGSGKKYKACHGRL
S