Protein Info for EX28DRAFT_3644 in Enterobacter asburiae PDN3

Annotation: Uncharacterized protein affecting Mg2+/Co2+ transport

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 125 PF04379: DUF525" amino acids 18 to 102 (85 residues), 122.5 bits, see alignment E=3.5e-40

Best Hits

Swiss-Prot: 92% identical to APAG_ENT38: Protein ApaG (apaG) from Enterobacter sp. (strain 638)

KEGG orthology group: K06195, ApaG protein (inferred from 97% identity to enc:ECL_00848)

Predicted SEED Role

"ApaG protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (125 amino acids)

>EX28DRAFT_3644 Uncharacterized protein affecting Mg2+/Co2+ transport (Enterobacter asburiae PDN3)
MIDSPRVCVHVQSVYVESQSSPDEERFVFAYTVTIRNLGRMPVQLRGRYWLITNGNGREI
EVQGEGVVGEQPHIAPGEEYQYTSGAVIETPMGTMQGHYEMVDVDGNDFRVAIPVFRLAV
TTLIH