Protein Info for EX28DRAFT_3506 in Enterobacter asburiae PDN3

Annotation: PAS domain S-box

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1860 transmembrane" amino acids 906 to 927 (22 residues), see Phobius details amino acids 938 to 958 (21 residues), see Phobius details PF00069: Pkinase" amino acids 69 to 276 (208 residues), 71.5 bits, see alignment E=3.5e-23 PF07714: PK_Tyr_Ser-Thr" amino acids 122 to 232 (111 residues), 48 bits, see alignment 4.7e-16 PF13191: AAA_16" amino acids 327 to 508 (182 residues), 78.6 bits, see alignment E=3.7e-25 PF13185: GAF_2" amino acids 1327 to 1471 (145 residues), 31.5 bits, see alignment 8.3e-11 PF01590: GAF" amino acids 1327 to 1470 (144 residues), 38.1 bits, see alignment 1e-12 TIGR00229: PAS domain S-box protein" amino acids 1513 to 1619 (107 residues), 23.9 bits, see alignment 1.9e-09 PF08447: PAS_3" amino acids 1521 to 1595 (75 residues), 32.8 bits, see alignment (E = 3.2e-11) PF00512: HisKA" amino acids 1637 to 1703 (67 residues), 29.8 bits, see alignment (E = 2.2e-10) PF02518: HATPase_c" amino acids 1747 to 1856 (110 residues), 81 bits, see alignment 3.9e-26

Best Hits

KEGG orthology group: None (inferred from 92% identity to enc:ECL_00717)

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1860 amino acids)

>EX28DRAFT_3506 PAS domain S-box (Enterobacter asburiae PDN3)
MNEHEQPAFWPAQGNLHQGRVFVLKEDVIFTVLAQEGGIAWMHARHPHSGGSFIIATAVS
DEEEERATRLLKNEFALRDVLQDSWAIRAVASTQYRGRFALVYAPFSFELLARRAGRAIS
GITRFLEMAIQICVPLRQMHLQNLIHGDIKPGTIFVHHDATCRLGSFGLSSSLSDAITQT
RLAVSGGTPAYMSPEHTTRTQRPVDGRSDLYSLGMVLYELLTGRLPFELGENDRDNWAHY
HIASAPLAPDAIRPDVPGMLSTIILKLLEKHPDNRYQTVDGLIADLRRCQATLTCEGEIV
AFTPGQQDRTPAIHLADSLFATHPQANDVIAAFERVGQNLAPELVTIGGPSGIGKSSIIA
TALKTLQQRTVLLAVGKVDQFSPSLPYGVLSSAFRTLTLHLLGLPAEDVAKWKIRLSRAL
EGHEALAVSLVPELGLLLESKPRFSADTFSIDARARFSHMVLALVKTFASQGCPLVLVLD
DLQWSDAASLHTLKYLLMNCGAVPLLVVAAHRDISAVSDAALQALLAGLPEAAQNASEIV
PQALSVKAVARWLGTVFRTRSAATTDLATLIHEKTGGNPLFVHEFFRRIVDDGLVVHNKY
QDKWHYDLQAIRARHYTENVVTLVLEQLEELPDETRRLLGSIACLGGTGEMEMICRVVGM
SMAEMRYALHPAVMAQLIVLTEKKYAFTHDRVQEAAFALLERHEKSHIHLTTASLLADAA
RQAAGNELLFRAVHHVTAALDSIQPAPQRQMFRELSLLAARRAKRSGDYLSALGYIQTAR
ALGNAGTVSDFMLDIEEAGCEFALGHLERTRELCDAILGCPGGLTEKALAANLLVEVYIR
QSDSRLALEAALCWLGIFGIQISRYPEDADCDEAWALFCNRTADAPQNLFAQLSLMDNPE
TEAVMNLLYSASICASFICPRLHFLLLCRMMHLTLDHGITGASTTAMAWFGVLIGHRYAE
YRLGFQYGTLARELVNRHGYDAFEAKTLLPLDQLSVWTQPLSFTIECAKACFTSAVTHGD
MTMACFAACHQVINFLSRGDHLDGVLTSIDRGLSFVRKTHFQDVETILMVQRGYVEFLRT
PVIGTWTASQVLPEALLPASPEQAPEKNSTMLFWYWLYRGMAHFTCGEYADAQADFEMAG
WYAWSAPGHIHLLDYHLYSALALSRQLTPETFSANHRRSIHTHYDKIALWARVNPGTFAD
KEALIYAEIVRLDGMNSIALEQYEKAVRLSREGGFNPINALAHELAGRFALACGYPTASD
AHFRGSIAAWGRAGAQAKVRQLEQDFPHLLAFGQASAYDTVAFAQNETIRDLQSVIKASR
ALSEEINLERLIENLMTILLERAGAQRGLLLRVSESLIPEIEASAWTSTEGVRVRILKDV
PTATDLPLSVLAAVIRTGQEIRTGRPEEFHPFSQDPYLVTSGAAVMCVPMFKQARLVGVL
YLENRLMPEVFTAEHSRVVSLLGAQAAVSLETARLYAELLAENIQRRRVEKELRSSQTSL
MLGEQISHTGSWRWELEQDLMFVSEEYARILGLPERQKMISMAEFLTFVHEDDYARISAI
VTESVRDGLSMRAEFRVKRPDGSTRYILGIGDPVGVGSEVNEYYGIITDITSQRAAEDAM
RVAQADLARVSRATTVGQLTSSIAHEINQPLMSIVSNAGASLRWLNREPARLDKVREGLE
EIAAEGARAGEIIRSIQSLTRKQDPTFSRIDMHYLIHHIITLSRSELEQRHISVDYLLKA
QDSFITGDSVQIQQVLLNLVMNAVEAMAEVKDRASTITLSTANADGRVIVEIADTGSGIE
PERLEQIFDSFYSTKAQGMGMGLTISASIIERHCGKLSARRREPYGTVFAFALPLAAQEG