Protein Info for EX28DRAFT_3499 in Enterobacter asburiae PDN3

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 transmembrane" amino acids 30 to 52 (23 residues), see Phobius details amino acids 66 to 88 (23 residues), see Phobius details amino acids 96 to 117 (22 residues), see Phobius details amino acids 123 to 144 (22 residues), see Phobius details amino acids 157 to 174 (18 residues), see Phobius details amino acids 180 to 181 (2 residues), see Phobius details amino acids 187 to 206 (20 residues), see Phobius details amino acids 242 to 262 (21 residues), see Phobius details amino acids 273 to 293 (21 residues), see Phobius details amino acids 305 to 325 (21 residues), see Phobius details amino acids 331 to 351 (21 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details amino acids 392 to 412 (21 residues), see Phobius details PF05977: MFS_3" amino acids 21 to 536 (516 residues), 603.9 bits, see alignment E=2.3e-185 PF07690: MFS_1" amino acids 34 to 378 (345 residues), 123.5 bits, see alignment E=9.9e-40

Best Hits

KEGG orthology group: None (inferred from 98% identity to enc:ECL_00710)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (539 amino acids)

>EX28DRAFT_3499 Arabinose efflux permease (Enterobacter asburiae PDN3)
MTQVNDVRDAHVETTPASTVSPWQPLSQPVFRMLWIATVVSNVGSWMSDVGINWSMLTLS
ADPLDIALVQAASSLPMFLFALPSGVMADIVDRRKYLLFSQLWVFIAAAGLTVLSFTGHV
TPAVLLVATFLLSVGAAMSSPPFQAVVPDLVSKPELGAAVALNSLGVNISRAIGPALGGF
LLSLAGPWMVFALNALSVVGVAWVLWRWRPAPSVQRLPPEHFFSAVRSGIRYVHAAPVLR
NVLVRTVAFFVFGSAGWALLPLVARRELGLGPAGYGVMLACIGLGAIAGAILLPRLRQRL
DADRLMVAASLTFALTMLALAFVRHVWLLNLFEFFTGFAWIAVLSTLNLGAQRSAARWVK
ARALAVYLTVFFGSMTAGSAIWGQIASRFGTPTSLVVATLGMVLASATVFRWKLGKDPDL
NLDLSGQPLDGVEIDLPNERGPVLVSHEYIIDPQNTKAFLEAVHELRRVRRRAGAMSWAV
YEDIERPGLFIETFLMGSWIEHLRQQERHTMNDLLLQSRVLAFHQGTTSPAIRYLVAPV