Protein Info for EX28DRAFT_3488 in Enterobacter asburiae PDN3

Annotation: Integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 PF20172: DUF6538" amino acids 8 to 60 (53 residues), 27.8 bits, see alignment 1.6e-10 PF00589: Phage_integrase" amino acids 230 to 362 (133 residues), 41.1 bits, see alignment E=1.7e-14

Best Hits

KEGG orthology group: None (inferred from 73% identity to ecg:E2348C_4607)

Predicted SEED Role

"Integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>EX28DRAFT_3488 Integrase (Enterobacter asburiae PDN3)
MIYKRDRYLVLDPCGNYLVRIAIPKYMRHLFGGRHNYVKSTGTRDVREARLFRDAVALEW
FKIRNLIKPQRDRGSKVEQILNELRQVGTYAHEAPEPLSAPVMSCPSLLRMRDQYILQFS
EKRKLTTLSKTNKAVEVFLEHLKKRDVQLRDINRTTVTGWLDKLKTEKAPQTIQNYVSAL
AQIWDLARNRYHDAPQENIWRGHALEAKSSKVSYEVFEPGELAKVFAEMADDEEMQNVTL
IGMYSGMRLNEICSLRTANIREIEGVLCFEVTEGKTKSAVRIVPVHSLITPLVLSLREKP
YNGFLFYRASITDRADGKRSTWHSQRFTRAKRKALGEAGSELKVFHSLRHQVAQMLDRGG
IGKGKLKPVPEDRIALLLGHDRGSTESFKTYSKNAASPVELRQYIELLRYPEIENQ