Protein Info for EX28DRAFT_3407 in Enterobacter asburiae PDN3

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1258 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF04357: TamB" amino acids 922 to 1258 (337 residues), 228.1 bits, see alignment E=1.1e-71

Best Hits

Swiss-Prot: 86% identical to TAMB_CITRI: Translocation and assembly module subunit TamB (tamB) from Citrobacter rodentium (strain ICC168)

KEGG orthology group: K09800, hypothetical protein (inferred from 96% identity to enc:ECL_00625)

Predicted SEED Role

"Uncharacterized protein YtfN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1258 amino acids)

>EX28DRAFT_3407 Uncharacterized protein conserved in bacteria (Enterobacter asburiae PDN3)
MSLWKKISLGVLIFIVLLLGTVAFLVGTTTGLHLLFNAANRWVPGLEIGQVTGGWRDLRL
KNIRYEQPGVAVNAGEFHLAVKLGCLRDSKLCVNDLSLKDVNVAIDSKKMPKSAPVEEED
SGPLNLSTPYPIALYRVALDNVNIKIDDTTVSVMDFSSGLRWQEKNLTLTPTSLQGLLIA
LPKVADVAQEEIVEPKIQNPQPEEKPLGETLKDLFSKPVLPEMTDVHLPLNLNIEEFKGE
QLRLTGDTDLTVYTMLLKVSSIDGNMKLDALDIDTNQGSVNASGNALLRDNWPVDITLNS
ALNIDPLKGEKVKVKVGGALRDKLDVGVNLSGPVDMVLRAQTQLAEAGLPLNLEVVSKQL
SWPFTGEKQFQADDLKLKLSGKMTDYTLSFRTAVKGQGVPPANITLDAKGNEQQVNLDKL
TVAALEGKTELTALLDWQQAISWRGELKLTGINTAKEVPDWPSKLDGLIKTRGSLYGGTW
QMDVPEIKLTGNVKQNKVNVEGSVKGNSYLQWVIPGLHVALGRNTADIKGELGVKDLNLD
ATIDAPNLDNALPGLGGTAKGLVKVRGTVEAPQLLADITANNLRWQELSVARVRVEGDVK
STDQIGGSLNLRVERISQPDVNINLVTLDAKGNEKQHDLQLRVQGEPVSGQLHLTGSFDR
KEERWKGTLDNTRFTTPVGPLALSRSIALDYRNAEQKISIGPHCWTNPNAELCVPQTIDA
GAEGRAQINLNRFDLAMLKPFMPDTTQASGVFSGKADVAWDTTKEGLPQGSVTLSGRNVK
VTQEVNDAPLPVAFDTLNLSADLHNNRAQLGWTIRLTNNGQLDGQVQITDPQGRRNLGGN
VNVRNFNLAMVNPIFARGEKAEGMVNANLRLAGNVQSPQLFGQLRLSGVDIDGNFMPFDM
QPSQIAMNFNGMSSTLSGSVLTQQGQINLSGDADWSQIDNWRARIAAKGSRVRITVPPMV
RLDVSPDVVFEATPSLFTLDGRVDVPWARIVVHDVPESAVGVSSDEVMLNENLKPIEQKS
AGIPINSNLIVHVGNNVRLNAFGLKARLTGDLKVAQDKQGLGLNGQITIPEGRFHAYGQD
LIVRKGELLFSGPPDQPLLNIEAIRNPEATEDDVIAGVRVTGSADEPKAEIFSDPAMSQQ
EALSYLLRGQGLNSGQSDSAAMTSMLVGLGVAQSGQVVGKIGETFGVSNLALDTQGVGDS
SQVVVSGYVLPGLQVKYGVGIFDSLATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF