Protein Info for EX28DRAFT_3319 in Enterobacter asburiae PDN3

Annotation: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1037 signal peptide" amino acids 9 to 11 (3 residues), see Phobius details transmembrane" amino acids 12 to 28 (17 residues), see Phobius details amino acids 340 to 359 (20 residues), see Phobius details amino acids 366 to 389 (24 residues), see Phobius details amino acids 395 to 416 (22 residues), see Phobius details amino acids 438 to 460 (23 residues), see Phobius details amino acids 471 to 496 (26 residues), see Phobius details amino acids 540 to 558 (19 residues), see Phobius details amino acids 873 to 891 (19 residues), see Phobius details amino acids 898 to 918 (21 residues), see Phobius details amino acids 924 to 947 (24 residues), see Phobius details amino acids 974 to 994 (21 residues), see Phobius details amino acids 1006 to 1028 (23 residues), see Phobius details TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 1 to 1035 (1035 residues), 1838.4 bits, see alignment E=0 PF00873: ACR_tran" amino acids 1 to 1029 (1029 residues), 1422.3 bits, see alignment E=0 PF03176: MMPL" amino acids 303 to 496 (194 residues), 21.3 bits, see alignment E=1.8e-08 PF02355: SecD_SecF" amino acids 874 to 1020 (147 residues), 21.6 bits, see alignment E=2e-08

Best Hits

Swiss-Prot: 84% identical to ACRF_ECOLI: Multidrug export protein AcrF (acrF) from Escherichia coli (strain K12)

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 68% identity to abo:ABO_0964)

MetaCyc: 72% identical to multidrug efflux pump RND permease MdtF (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-352; TRANS-RXN-359; TRANS-RXN-367

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1037 amino acids)

>EX28DRAFT_3319 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family (Enterobacter asburiae PDN3)
MANFFIQRPVFAWVLAIILMIAGGLAILKLPVAQYPTIAPPAVAISATYPGADAQTVQDT
VTQVIEQNMNGIDKLMYMSSTSDSAGNVTITLTFESGTDPDIAQVQVQNKLQLAMPLLPQ
EVQQQGIGVEKSSSSFLLVAGFVSDNKDLTQNDISDYVASNVKDAISRTSGVGDVQLFGA
QYAMRIWLDSNTMNKYQLTPQDIINQLKTQNDQIAAGQLGGTPSIPGQQLNASIIAQTRL
KSPEEFGRVTLKVNQDGSMVHLKDVARIELGGENYNMVTKINGQAATGLGIKLATGANAL
DTAAAIKSKLAQLQQFFPQGLKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQ
NLRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM
VEDKLPPKEATQKSMEQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSLTIVSAMAL
SVLVALILTPALCATLLKPVSGDHHENKGGFFGWFNALFDKSVEHYSNSVSGILRKAGRY
LAVYVIIVGGMAVLFLRLPTSFLPEEDQGVFMTMVQLPAGATQTRTQQVLDQVQDYYLNN
EKANVESVFTVNGFSFSGQGQNAGIAFVSLKPWEERPGSENGVEAIVGRATKAFSQITDG
LVFPFNLPAIIELGTATGFDFELIDQANLGYTQLTQARNQLLSMVHEHPDLLVRVRPNGL
EDTPQFKLDVDQEKAQALGVSLSDVNQTISTALGGSYVNDFIDHGRVKKVYVQADAKFRM
LPGDINNLYVRSANGEMVPFSAFSNAHWVYGSPRLERYNGMPSMEILGESAPGKSTGEAM
AMMESLAAKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSV
MLVVPLGVIGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGII
EATLEASRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMLSATLLAIFF
VPVFFVVVRRRFTHHKD