Protein Info for EX28DRAFT_3109 in Enterobacter asburiae PDN3

Annotation: Mu-like prophage FluMu protein gp41

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 102 PF10109: Phage_TAC_7" amino acids 18 to 96 (79 residues), 44.7 bits, see alignment E=5.6e-16

Best Hits

Swiss-Prot: 68% identical to TAP_BPP2: Tail assembly protein E (E) from Escherichia phage P2

KEGG orthology group: None (inferred from 74% identity to ent:Ent638_3480)

Predicted SEED Role

"Tail protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (102 amino acids)

>EX28DRAFT_3109 Mu-like prophage FluMu protein gp41 (Enterobacter asburiae PDN3)
MENINETAMNESENPHIVTLDSPVQRGEQKIEKVTVSKPNAGTLRGVSLASLAQSDVDAL
IKVLPRMTSPALTEHEVARLDACDLLSFAGKVIGFLSPASAR