Protein Info for EX28DRAFT_3083 in Enterobacter asburiae PDN3

Annotation: SH3 domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 174 to 196 (23 residues), see Phobius details TIGR04211: SH3 domain protein" amino acids 28 to 205 (178 residues), 172.9 bits, see alignment E=3e-55 PF08239: SH3_3" amino acids 37 to 84 (48 residues), 31.7 bits, see alignment 7.1e-12

Best Hits

Swiss-Prot: 88% identical to YGIM_ECOLI: Uncharacterized protein YgiM (ygiM) from Escherichia coli (strain K12)

KEGG orthology group: K07184, SH3 domain protein (inferred from 98% identity to enc:ECL_04381)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (207 amino acids)

>EX28DRAFT_3083 SH3 domain protein (Enterobacter asburiae PDN3)
MMLKLRLIGLTLLAFSAATAVHAEEKRYVSDELNTWVRSGPGDNYRLVGTVNAGEEVTLL
QTNADTNYGQVRDSTGRTSWIPLKELSTVPSLRTRVPDLENQVKTLTDKLNNIDGTWNQR
TAEMQQKVAQSDGVINGLKEENQKLKNELIVAQKKVNAANLQLDDKQRTIIMQWFMYGGG
VLGVGLVLGLVLPHLIPSRKRKDRWMN