Protein Info for EX28DRAFT_3051 in Enterobacter asburiae PDN3

Annotation: uncharacterized radical SAM protein YgiQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 723 PF08497: Radical_SAM_N" amino acids 29 to 379 (351 residues), 468.6 bits, see alignment E=1.3e-144 TIGR03904: uncharacterized radical SAM protein YgiQ" amino acids 29 to 644 (616 residues), 884.2 bits, see alignment E=1.7e-270 PF04055: Radical_SAM" amino acids 380 to 585 (206 residues), 42.6 bits, see alignment E=1.1e-14 PF11842: DUF3362" amino acids 594 to 702 (109 residues), 138.3 bits, see alignment E=3.8e-44

Best Hits

Swiss-Prot: 93% identical to YGIQ_ECOLI: UPF0313 protein YgiQ (ygiQ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 94% identity to esc:Entcl_0736)

Predicted SEED Role

"Probable Fe-S oxidoreductase family 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (723 amino acids)

>EX28DRAFT_3051 uncharacterized radical SAM protein YgiQ (Enterobacter asburiae PDN3)
MSAISLIQPDRDLFSWPQYWAACFGPAPFLPMSREEMDQLGWDSCDIILVTGDAYVDHPS
FGMAICGRMLEAQGFRVGIISQPDWNSKDDFMRLGKPNLFFGVTAGNMDSMINRYTADRK
LRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILGGIEASLRRTAHYDYWSDTVR
RSVLVDSKADMLIYGNGERPLVEVAHRLSQGEPVSSIRDVRNTAIMVKEALPGWSGVDSR
IIDMPGKIDPIPHPYGEDLPCADNKPVEPKKAEAKAIVVQPPRPKPWEKTYVLLPSYEKV
KADKVLYAHASRILHHETNPGCARALMQKHGERFIWINPPAIPLSTEEMDSVFALPYKRV
PHPAYGNARIPAYEMIRFSINIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRD
SVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPSICEHMDTNHEPTINLYRR
ARDLKGIKKILIASGVRYDIAVEDPRYIKELATHHVGGYLKIAPEHTEEGPLSKMMKPGM
GSYDRFKELFDTYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKQRRFRLDQVQNFY
PSPLANSTTMYYTGKNPLSKIGYKSEEVVVPKGDKQRRLHKALLRYHDPKNWPLIRQALE
EMGKKHLIGSRRDCLVPAPTLDEMREARRQNRNTRPALTKHTPIVHQRSNGNSSVKKPMK
RKA