Protein Info for EX28DRAFT_2994 in Enterobacter asburiae PDN3

Annotation: Uncharacterized protein conserved in bacteria

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 112 PF04480: DUF559" amino acids 3 to 106 (104 residues), 146.6 bits, see alignment E=2.4e-47 PF18741: MTES_1575" amino acids 29 to 105 (77 residues), 41.1 bits, see alignment E=1.6e-14

Best Hits

Swiss-Prot: 56% identical to YCJD_ECOLI: Uncharacterized protein YcjD (ycjD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 60% identity to esc:Entcl_0798)

Predicted SEED Role

"protein of unknown function DUF559"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (112 amino acids)

>EX28DRAFT_2994 Uncharacterized protein conserved in bacteria (Enterobacter asburiae PDN3)
MEKSKQLRKEMTPEELRLWYLLRGRRFFGYKFRRQMPIGTYIVDFACFKAKLIVELDGGQ
HQGEEDYDSRRTAFLNTNGWEVVRFWNNEFRANEEVVLMAILQRLQCLMPSP