Protein Info for EX28DRAFT_2926 in Enterobacter asburiae PDN3

Annotation: Amino acid permeases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 35 to 53 (19 residues), see Phobius details amino acids 88 to 109 (22 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 152 to 173 (22 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 236 to 259 (24 residues), see Phobius details amino acids 283 to 308 (26 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 390 to 408 (19 residues), see Phobius details

Best Hits

Swiss-Prot: 85% identical to YQEG_ECOLI: Inner membrane transport protein YqeG (yqeG) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 91% identity to ent:Ent638_3302)

Predicted SEED Role

"Serine transporter" in subsystem Glycine and Serine Utilization or Pyruvate Alanine Serine Interconversions or Threonine anaerobic catabolism gene cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (409 amino acids)

>EX28DRAFT_2926 Amino acid permeases (Enterobacter asburiae PDN3)
MSKIWSKDETLWSFALYGTAVGAGTLFLPIQLGSAGAIVLFITALVAYPLTYWPHRALAQ
FILSSKTKGNEGITGAVSHYYGRKIGNLITTLYFIAFFVVVQIYAVAITNSLTEQLAKHL
TVDTAVRVLVSLGVVLVLNLIFLMGRHITIKVMGFLVFPLIAYFLFVSLYLTGSWQPSLL
TSQMAVDRHTLHQVWISIPVMVFAFSHTPIISTFAVDRREKFADGAMDKCKKIMKVAYLI
ICLSVLFFVFSCLLSIPPSYIVAAKEQGVTILSALSMMPSSPAWLGISGIIVAIIAMSKS
FLGTYFGVIEGATEIVKSSLNQVGVKKSRAFNRAISIMGVSLITFAVCCINPNAISMIYA
ISGPLIAMILFIMPTLSTYLIPSLKQYRSIGNLLTLIVGVLCVSVMFVG