Protein Info for EX28DRAFT_2829 in Enterobacter asburiae PDN3

Annotation: DNA mismatch repair protein MutS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 853 TIGR01070: DNA mismatch repair protein MutS" amino acids 10 to 850 (841 residues), 1354.3 bits, see alignment E=0 PF01624: MutS_I" amino acids 11 to 122 (112 residues), 149.9 bits, see alignment E=8.2e-48 PF05188: MutS_II" amino acids 131 to 256 (126 residues), 128.7 bits, see alignment E=4.8e-41 PF05192: MutS_III" amino acids 272 to 559 (288 residues), 174.1 bits, see alignment E=1.1e-54 PF05190: MutS_IV" amino acids 428 to 517 (90 residues), 106.3 bits, see alignment E=2.1e-34 PF00488: MutS_V" amino acids 610 to 797 (188 residues), 300.2 bits, see alignment E=1.7e-93

Best Hits

Swiss-Prot: 94% identical to MUTS_CITK8: DNA mismatch repair protein MutS (mutS) from Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)

KEGG orthology group: K03555, DNA mismatch repair protein MutS (inferred from 94% identity to cko:CKO_04095)

MetaCyc: 93% identical to DNA mismatch repair protein MutS (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"DNA mismatch repair protein MutS" in subsystem DNA repair, bacterial MutL-MutS system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (853 amino acids)

>EX28DRAFT_2829 DNA mismatch repair protein MutS (Enterobacter asburiae PDN3)
MSTIDNFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGA
SAGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGTIS
DEALLQERQDNLLAALWQDGKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLY
AEDFAEMALIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLIGFGVENAPRGLCAAGCL
LQYVKDTQRTALPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLASVLDSTVT
PMGSRMLKRWLHMPIRNTETLVCRQQTIAALQDRYTELQPVLRQVGDLERILARLALRTA
RPRDLARMRHAFQQLPELRTQLSDVDSAPVQTLRETMGEFTELRELLERAIIDAPPVLVR
DGGVIAPGYNEELDEWRALADGATDYLDKLEIRERERLGLDTLKVGYNAVHGYYIQISRG
QSHLAPIHYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYDELFDMLMPHLG
DLQQSASALAELDVLVNLAERAETLNYTCPTFTDKPGIRITEGRHPVVEQVLNEPFIANP
LSLSPQRRMLIITGPNMGGKSTYMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAA
DDLASGRSTFMVEMTETANILHNATEHSLVLMDEVGRGTSTYDGLSLAWACAESLANKIK
AMTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHTVQDGAASKSYGLAVAALAG
VPKEVIKRARQKLRELESLSPNAAATQIDGTQMSLLVPAEETSPAVGALENLDPDSLTPR
QALEWIYRLKSLV