Protein Info for EX28DRAFT_2648 in Enterobacter asburiae PDN3
Annotation: Integrase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 38% identical to VINT_BPP4: Integrase (int) from Enterobacteria phage P4
KEGG orthology group: None (inferred from 91% identity to etr:ETAE_0799)Predicted SEED Role
"Phage integrase, Phage P4-associated"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (391 amino acids)
>EX28DRAFT_2648 Integrase (Enterobacter asburiae PDN3) MPLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRFAGKPKMISLGVYPTIT LADARSRREDARKLVAEGKNPSEVRKEQKIALQTESENAFEKIATEWHQMKSTKWSAGYA SDIMEAFQNDIFPYVGERPIGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA TGRAEFNPAADLSSALEVHQSNHYPFLKADEITDFLRALDSYTGSRLVQIATKLLMITGV RTIELRAALWSEFDLDNALWEIPAERMKMRRAHLVPLSTQALDLLNELKIMTGNYRYVFP GRNDPNKPMSEASINQLIKRIGYGGKLTGHGFRHTLSTILHERGYESIWIEMQLAHVDKN NIRGTYNHAQYISNRRVMLSWYSDFIFKSGE