Protein Info for EX28DRAFT_2628 in Enterobacter asburiae PDN3

Annotation: Aspartate/tyrosine/aromatic aminotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 transmembrane" amino acids 360 to 380 (21 residues), see Phobius details PF00155: Aminotran_1_2" amino acids 34 to 367 (334 residues), 190.9 bits, see alignment E=4.1e-60 PF04864: Alliinase_C" amino acids 167 to 277 (111 residues), 29 bits, see alignment E=5.2e-11

Best Hits

KEGG orthology group: None (inferred from 52% identity to rce:RC1_0933)

Predicted SEED Role

"Valine--pyruvate aminotransferase (EC 2.6.1.66)" in subsystem Alanine biosynthesis or Branched-Chain Amino Acid Biosynthesis or Pyruvate Alanine Serine Interconversions (EC 2.6.1.66)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.6.1.66

Use Curated BLAST to search for 2.6.1.66

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (383 amino acids)

>EX28DRAFT_2628 Aspartate/tyrosine/aromatic aminotransferase (Enterobacter asburiae PDN3)
MKSLSQRSDISPFVVMDVMQAAAEREAHGKIVWHLEVGQPGTSAPAPVIEALKTALPQQT
LGYTVAAGLSALRENISQHYADFYGISVPAENIIVTPGSSAAFILAFLSGFDKGDRVAVP
VPGYPCYRNILLALDLIPVDIHVTAETDYLITARHLRDLTEPVDGIIVSSPNNPTGTMYD
AAVLDELAVYCDSNAITLISDEIYHGITFGTKASSVRQYSEKAIVVNSFSKYFSMTGWRI
GWMIVPDNWLRTVERLIQNLFIATSTLSQVGAIHAFKAYQLMDEYVSGYQQRRDILYAAL
KECGLQNITYPQGAFYIYADVSHLTHDSVAFCKQLLEETGVAITPGVDFDPYNGHKFIRF
SFAADLATITSASEILISWFSRR