Protein Info for EX28DRAFT_2544 in Enterobacter asburiae PDN3

Annotation: Arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 453 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 48 to 69 (22 residues), see Phobius details amino acids 80 to 99 (20 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 217 to 240 (24 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details amino acids 280 to 299 (20 residues), see Phobius details amino acids 305 to 327 (23 residues), see Phobius details amino acids 339 to 361 (23 residues), see Phobius details amino acids 368 to 388 (21 residues), see Phobius details PF07690: MFS_1" amino acids 20 to 354 (335 residues), 149.8 bits, see alignment E=1.5e-47 amino acids 278 to 386 (109 residues), 36.6 bits, see alignment E=3.8e-13 PF00083: Sugar_tr" amino acids 46 to 194 (149 residues), 42.1 bits, see alignment E=8.5e-15 PF21987: YajR_YAM" amino acids 397 to 452 (56 residues), 88.9 bits, see alignment 2.2e-29

Best Hits

Swiss-Prot: 84% identical to YAJR_ECOLI: Inner membrane transport protein YajR (yajR) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 96% identity to enc:ECL_01184)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (453 amino acids)

>EX28DRAFT_2544 Arabinose efflux permease (Enterobacter asburiae PDN3)
MNDYKMTPGELRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQGASEALIGFAIGIYGLA
QAVFQIPFGLLSDRVGRKPLIVGGLLVFVLGSVIAALSHSIWGIILGRALQGSGAIAAAV
MALLSDLTREQNRTKAMAFIGVSFGVTFAIAMVLGPIITHTLGLHALFWMIAVLATIGIA
LTLWVVPDSKNHVLNRESGMVKGCFRKVIVEPRLLKLNFGIMCLHILLMSTFVALPGQLA
AAGFPAAEHWKIYLVTMLISFVSVVPFIIYAEVKRKMKRVFVGCVAVLLIAEIVLWGAGP
HFWELIAGVQLFFLAFNLMEALLPSLISKESPAGYKGTAMGIYSTSQFLGVAIGGSLGGW
VDGLFDSQTVFLAGALLATVWLLVASTMKEPRYVSSLRVEIPDDVEISDMLKQRLEAKEG
VTEVLIVPEERSAYVKIDSKMTNRFEVEQALKA