Protein Info for EX28DRAFT_2427 in Enterobacter asburiae PDN3

Annotation: filamentous hemagglutinin family N-terminal domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 877 signal peptide" amino acids 1 to 40 (40 residues), see Phobius details PF05860: TPS" amino acids 45 to 296 (252 residues), 183.9 bits, see alignment E=2.7e-58 TIGR01901: filamentous hemagglutinin family N-terminal domain" amino acids 73 to 169 (97 residues), 74.3 bits, see alignment E=5.8e-25 TIGR01731: adhesin HecA family 20-residue repeat (two copies)" amino acids 300 to 339 (40 residues), 19.3 bits, see alignment 8.6e-08 amino acids 360 to 390 (31 residues), 13.2 bits, see alignment (E = 7.1e-06) amino acids 399 to 426 (28 residues), 11.6 bits, see alignment (E = 2.2e-05) amino acids 427 to 452 (26 residues), 12.5 bits, see alignment (E = 1.2e-05) amino acids 492 to 519 (28 residues), 15.2 bits, see alignment (E = 1.7e-06) amino acids 580 to 619 (40 residues), 6.4 bits, see alignment 0.00097 amino acids 748 to 785 (38 residues), 7.7 bits, see alignment (E = 0.0004)

Best Hits

Predicted SEED Role

"Hemolysin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (877 amino acids)

>EX28DRAFT_2427 filamentous hemagglutinin family N-terminal domain (Enterobacter asburiae PDN3)
MKNKSAVSTRSNTKVLHAKLAPTCFATMLALGMIMPAQAAIVAGNTDKPAIHTDASGATI
VDINKASAGGVSHNVYSEFNVDSNGVILNNSGTATNTQLAGQIDGNANMAGGSAKVILNE
VRSSDPSQLNGMVEVAGQSAQVIIANPSGITCDGCGFINTNHATLTTGTATYDNKGNVTG
LDVSKGQVTITGKGMDTRSTQYTDIIARSVKVNAKVQANELNIVTGNNHIDKYGHVQKKY
DSSNAPDVALDVSALGSMYANKIYMEGTDAGVGVHIDRADLTASDTLSINVDGVVENNGG
HISGKNAATVMGSDVLNRNGQITSEGMVSVAADNTLDNTNGVIKATMVNLSGKNTVNSHG
SIQGSQNTFITADSLNNSDGEILSNGDLTIGRASRNYNAQGVNNTRGRIDAKGALNVDAA
SLNNSAGRVETNGAMAVNVDTLTNDNGLISAGNGWNMINASMLNNDNGVIQSLGSDSQLQ
VSGNNMLSNRNGSIHSDGSVSINGALDNMSGTIAAGKDLFMYGTSYYSDLASKMEAGGNI
DMTVTGTFQNAGTLKAGQDMMLNIGSNGWNSYGGPAHNSGSIAAGGRLALQMNSSQFDNS
GDITANQLDLQLADLSNSGSIVSKNDFNLNTTNLENRGHGTISADHNINVTTSYLMTDAG
SKINAGSDATLFVMNNLDNSGDIRAAHDINLTVMGSYGWSQSTAYNYGTMTAGNKLNAQM
DRVTLINGGTLSADNGITLVSNYLTNSGNITSAGDITLNTASGINNEASGKITGDSVYTT
GYVNNMGIINETGAATSDNGATTPDNGATTPDDSNTNTDSDATADNSGNTTVKPNGTPEG
NGVWENGVVYHPGDIYYGYVVQDIIYYPGGYVIATAA