Protein Info for EX28DRAFT_2277 in Enterobacter asburiae PDN3
Annotation: dinuclear metal center protein, YbgI/SA1388 family
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 91% identical to GCH1L_ECOL6: GTP cyclohydrolase 1 type 2 homolog (ybgI) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
KEGG orthology group: None (inferred from 97% identity to enc:ECL_03017)Predicted SEED Role
"FIG137478: Hypothetical protein YbgI"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (247 amino acids)
>EX28DRAFT_2277 dinuclear metal center protein, YbgI/SA1388 family (Enterobacter asburiae PDN3) MKNSELESLINEKLNSTSFSDYGPNGLQVEGRETVQKIITGVTASQALLDEAVRQNADAV IVHHGYFWKNESPIIRGMKRNRLKTLLANDINLYGYHLPLDAHPELGNNVQLAQLLGITV MGEIEPLVPWGELAMPVPGLELASWIEARLGRRPLWSGDTGPDTVKRVAWCTGGGQGFID SAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLTENTDLDVTF IDIPNPA