Protein Info for EX28DRAFT_2212 in Enterobacter asburiae PDN3

Annotation: ABC-type branched-chain amino acid transport systems, ATPase component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 PF00005: ABC_tran" amino acids 19 to 165 (147 residues), 80 bits, see alignment E=1.3e-26

Best Hits

KEGG orthology group: None (inferred from 84% identity to enc:ECL_02957)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtE" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>EX28DRAFT_2212 ABC-type branched-chain amino acid transport systems, ATPase component (Enterobacter asburiae PDN3)
MLSLRAVNQFYGSQHTLWNVNLDFPQGMCTGVVGLPGMGKTTLMNCIAGRVPVESGSIIW
HEAGAPPRDLLNLPPEQRSGPGIGYVPQDRRIFSQLTIEENLHIAMRAMGKPNPEAKSDV
YDLFPALYALRQARANTLSPDDQYQLALANALVNRPHLLILDEPLHGAGHSFAQRLGQLL
VRLNRELGMTVLLAEQQLSFIRRVADRFCMLYRGRNVAQGHVNELDDELIAHWMSREARR