Protein Info for EX28DRAFT_2066 in Enterobacter asburiae PDN3

Annotation: Uncharacterized protein contain chitin-binding domain type 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 609 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00182: Glyco_hydro_19" amino acids 105 to 333 (229 residues), 130 bits, see alignment E=1.3e-41 PF18911: PKD_4" amino acids 452 to 541 (90 residues), 38.6 bits, see alignment E=9.1e-14

Best Hits

KEGG orthology group: None (inferred from 81% identity to enc:ECL_02785)

Predicted SEED Role

"Chitinase (EC 3.2.1.14)" in subsystem Chitin and N-acetylglucosamine utilization (EC 3.2.1.14)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.14

Use Curated BLAST to search for 3.2.1.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (609 amino acids)

>EX28DRAFT_2066 Uncharacterized protein contain chitin-binding domain type 3 (Enterobacter asburiae PDN3)
MNKRTLLSVLIAGACVAPFMAQATQLQASSEPYTVKASDLQKKEQELTNFPLMASVKSTI
RTLDNSLVEQIEPGKSTNPENVKRVEGIIKASDWDYLFPLRAPEYTYSNFLKAVGKFPAL
CQTYTDGRNSDAICRKSLATMFAHFAQETGGHESWRPEAEWRQALVYVREMGWSEGQKGG
YNGECNPDVWQGQTWPCGKDKDGDFVSYFGRGAKQLSYNYNYGPFSEAMYGDVRVLLDKP
ELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGG
VECGGPTEIAQSQNRIKYYKEFANYLKVPVPSNEVLGCANMKQFDEGGAGALKIYWEQDW
GWSADTPSGQTYSCQLVGYQTPFSAFKEGDYTKCVKHYFNVNVVGEDGTSDGGSVTPAPT
PTPVDPTDEGNTTPVPDDNTPAPDDTTPAPVNHAPVAKIAGPVGAVEAGKSVSLNASGST
DEDGNHLTYTWTAPNGQTVSGDDKAIITFNAPEVAAATQYPINLTVSDGELSSTTTYTLN
VQAKQTNGGQTGTYPTWTSKTKWKAGDIVNNRGQLFQCKPYPYSGWCNNAPSYYEPGKGI
AWQDAWTAL