Protein Info for EX28DRAFT_2064 in Enterobacter asburiae PDN3

Annotation: Predicted nucleoside-diphosphate-sugar epimerases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 478 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 445 to 464 (20 residues), see Phobius details PF01370: Epimerase" amino acids 5 to 118 (114 residues), 51.2 bits, see alignment E=3e-17 PF05368: NmrA" amino acids 5 to 229 (225 residues), 47.9 bits, see alignment E=3e-16 PF01073: 3Beta_HSD" amino acids 6 to 114 (109 residues), 22.9 bits, see alignment E=1e-08 PF13460: NAD_binding_10" amino acids 9 to 127 (119 residues), 58.1 bits, see alignment E=2.9e-19 PF11066: DUF2867" amino acids 331 to 463 (133 residues), 53.7 bits, see alignment E=7.6e-18

Best Hits

Swiss-Prot: 83% identical to YBJT_ECOLI: Putative NAD(P)-binding protein YbjT (ybjT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 94% identity to enc:ECL_02783)

Predicted SEED Role

"FIG00638862: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (478 amino acids)

>EX28DRAFT_2064 Predicted nucleoside-diphosphate-sugar epimerases (Enterobacter asburiae PDN3)
MPQRILVLGASGYIGQHLTAALSQQGHRVLAAARNTERLQKLSLPGVTCHSVDLNWPKEL
PALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDALLQTPVKQVIFLSSLQVPEHEQS
DHLRARQLTAETLRGANIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTT
PIALENLLHYLVALLDHPAEQHRVLEAAGPEVLSYQEQFEHFMRVSGRRRWLIPIPFPTR
WISVWFLNVITSVPPTTAKALIQGLKHDLLADDRALRALIPQDLIRFDDAVRNTLKEEEQ
LVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTSASLADLWEVVNQIGGKDGYFFGNIL
WQTRGAMDLLVGHRLAKGRPARPYLEVGDAVDSWKVIIVEPEKQLAMLFGMKAPGLGRLC
FTLKDKGDCRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQRAEQKTEKI