Protein Info for EX28DRAFT_2042 in Enterobacter asburiae PDN3

Annotation: DNA segregation ATPase FtsK/SpoIIIE and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1233 transmembrane" amino acids 22 to 44 (23 residues), see Phobius details amino acids 75 to 98 (24 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 137 to 157 (21 residues), see Phobius details amino acids 165 to 184 (20 residues), see Phobius details PF13491: FtsK_4TM" amino acids 20 to 191 (172 residues), 149.9 bits, see alignment E=1.2e-47 PF17854: FtsK_alpha" amino acids 744 to 844 (101 residues), 100.9 bits, see alignment E=7.9e-33 PF01580: FtsK_SpoIIIE" amino acids 852 to 1065 (214 residues), 286.3 bits, see alignment E=2.9e-89 PF09397: FtsK_gamma" amino acids 1168 to 1228 (61 residues), 96.8 bits, see alignment 9.7e-32

Best Hits

Predicted SEED Role

"Cell division protein FtsK" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1233 amino acids)

>EX28DRAFT_2042 DNA segregation ATPase FtsK/SpoIIIE and related proteins (Enterobacter asburiae PDN3)
MSQEYTEDKEVTLSKLSSGRRLLEALLIVIALFAVWLMAALLSFNPSDPSWSQTAWHEPI
HNLGGVPGAWLADTLFFIFGVMAYTLPVIIIGGCWFAWRHRQNDDYIDYFAVSLRLIGAL
ALILTSCGLAAINADDIWYFASGGVIGSLLSSALQPMLHSSGGTLALLCIWAAGLTLFTG
WSWVSIAEKIGSFILTILTFASNRTRRDDTWVDEEEYEDEEEDDAPVQRRESRRARILRG
ALARRQRVAEKFANPLGRKTDAALFSGKRMDEDEQVAYRAAGVAVDPDDVLFSGSRATPG
DFDEYDPLLNGHSVTEPVAAAAAATTAAQAYAAPVDAVTPSAPVSPPESIIQQPQVDWQT
APGVHTPEPVIAPEPESYIPVQQEQWQQPYQPPQPAYEPQDYPHYEQPVAQPYQEYVPEP
VEPVQPYVEPQPEPEIVEEVKPSRPPMYYFEEVEERRAREREQLAAWYQPVPEPVQEPVT
KAPSVSVPPIDPTPAVAPVAESVKQATAAAAVAAPVFSLATGGTPRPQVKEGIGPQLPRP
NRVRVPTRRELASYGIKLPSQRMAEEKAREPEYEDDADEMQQDELARQFAAQQNQRYGEE
YQHDEPMLEDEEDAAEAELARQFAATQQQRYSGEQPAGANPFSLSDFEFSPMKDLVDDGP
SEPLFTPSVMPEAEPVRQQPAPQAYAQPHQPVQQPYAQPHQPVQQPQQSPQFQQPAPQPQ
ESLIHPLLMRNGDSRPLQRPSTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFR
IKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGL
ELPNKKRQTVYLREVLDNTKFRDNPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSG
KSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWS
VNEMERRYKLMSALGVRNLAGYNEKIAQAVRMGRPIPDPYWKPGDSMDAQHPVLEKLPYI
VVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRI
AFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTSPVRVHGAFVRDEEVHAVVQDWKA
RGRPQYVDGITSDTESEGGGGGFDGGEELDPLFDQAVNFVTEKRKASISGVQRQFRIGYN
RAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD