Protein Info for EX28DRAFT_1957 in Enterobacter asburiae PDN3

Annotation: Predicted membrane protein involved in D-alanine export

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 42 to 64 (23 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 97 to 115 (19 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 164 to 185 (22 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details amino acids 258 to 276 (19 residues), see Phobius details amino acids 288 to 305 (18 residues), see Phobius details amino acids 311 to 331 (21 residues), see Phobius details amino acids 344 to 366 (23 residues), see Phobius details PF03062: MBOAT" amino acids 77 to 322 (246 residues), 40.5 bits, see alignment E=1.1e-14

Best Hits

KEGG orthology group: K03739, membrane protein involved in D-alanine export (inferred from 86% identity to eca:ECA3129)

Predicted SEED Role

"D-alanyl transfer protein DltB" in subsystem D-Alanyl Lipoteichoic Acid Biosynthesis or Methicillin resistance in Staphylococci or Teichoic and lipoteichoic acids biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (372 amino acids)

>EX28DRAFT_1957 Predicted membrane protein involved in D-alanine export (Enterobacter asburiae PDN3)
MYSSGMFFVYLFSSALAFALVNRVLRHRLTWLSALSVLTALGWGYIFQGDYIVPVAVFFS
FYVFATLKEKGWLKTWQAVVLTLLPLLLVKLHLNNHWGMIGLSFMTFRALDVLLYRSKKE
GQNFLHYFCYLFMPFIILAGPMYRWRTWMSDVSKPVFALNREQFLVALEQIITGIVQKFL
FAMLIDSLVVQPWSHKPFTLTVGVVMSIAYSTYLYFDFAGYSNMAIGAGRLFGLNIPANF
NMPLLAKNPQDFWRRFHISLSEWLRDVVFMPVYMNLMKFNFFRQNKTLAQNIGIFCTLFC
MGAWNGLERHYVISGALFGAISVAHNMLLWSAKRSPALHRGLQYPAVAFLGRILTLGSAA
GSLYIFSGMSPL