Protein Info for EX28DRAFT_1938 in Enterobacter asburiae PDN3

Annotation: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00497: SBP_bac_3" amino acids 34 to 251 (218 residues), 166 bits, see alignment E=4.6e-53

Best Hits

KEGG orthology group: None (inferred from 96% identity to enc:ECL_02654)

Predicted SEED Role

"ABC-type amino acid transport/signal transduction systems, periplasmic component/domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (260 amino acids)

>EX28DRAFT_1938 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain (Enterobacter asburiae PDN3)
MKKLLIALAGAACLFTQLPAKADQLQDIEKRGTIRIAVPQDFPPFGSVGTDLQPQGYDID
MARYLAKQMKLKLQLVPVTSANRVPYLQTDKVDLVISSLGKNPEREKVIDFSRAYAPFFL
GVFGPKGAELKDAAALSGKTIGVTRGAVEDMVLTGLAPKDADVKRYEDNNTTLSAYLSGQ
VQYVATGNLVVAAISRQNADKAPVPSFMLKDSPCFIGLKKNEPALKAKVDALIEQGIKDG
TLNGLSEQWLKAPLPANLGA