Protein Info for EX28DRAFT_1856 in Enterobacter asburiae PDN3

Annotation: flagellar hook-basal body protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 TIGR03506: flagellar hook-basal body protein" amino acids 1 to 398 (398 residues), 313 bits, see alignment E=2e-97 PF00460: Flg_bb_rod" amino acids 6 to 33 (28 residues), 29.8 bits, see alignment (E = 7.2e-11) PF07559: FlaE" amino acids 172 to 297 (126 residues), 76.8 bits, see alignment E=3.5e-25 PF06429: Flg_bbr_C" amino acids 338 to 415 (78 residues), 70.1 bits, see alignment E=2.1e-23

Best Hits

Swiss-Prot: 80% identical to FLGE_SALTY: Flagellar hook protein FlgE (flgE) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K02390, flagellar hook protein FlgE (inferred from 80% identity to set:SEN1871)

Predicted SEED Role

"Flagellar hook protein FlgE" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>EX28DRAFT_1856 flagellar hook-basal body protein (Enterobacter asburiae PDN3)
MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGSASFADMFAGSKVGLGVKVAGITQD
FTDGTTTNTGRGLDVAISQNGFFRMVDSNGSVFYSRNGQFKLDENRTLVNMQGMQLTGYP
VAGTPPTVQTGANPQAITIPNTLMAAKSTTTATQQINLNSTDPVQTAPFDATNPDTYNKK
GTVTVFDSQGNAHNMYVYYVKTADNKWDLYTQDGSVAGSTAAKAAQMNFDANGNLAGVYN
YDAAGVLSATPNATPAINITTGSVSGATAATFSLSFQNSMQQNTGANSVVATNQNGYKPG
DLVSYQINDDGTVVGSYSNEQSQVLGQIVLANFANNEGLKSEGDNVWSASQSSGVALLGT
AGTGNFGKLTNGALEASNVDMSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR