Protein Info for EX28DRAFT_1815 in Enterobacter asburiae PDN3

Annotation: Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 90 to 112 (23 residues), see Phobius details amino acids 132 to 155 (24 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 195 to 212 (18 residues), see Phobius details amino acids 224 to 256 (33 residues), see Phobius details amino acids 278 to 296 (19 residues), see Phobius details amino acids 302 to 330 (29 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 7 to 326 (320 residues), 84.1 bits, see alignment E=5e-28

Best Hits

Swiss-Prot: 69% identical to YCFT_ECOLI: Inner membrane protein YcfT (ycfT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 93% identity to enc:ECL_02521)

Predicted SEED Role

"FIG00626940: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (357 amino acids)

>EX28DRAFT_1815 Predicted membrane protein (Enterobacter asburiae PDN3)
MKQKALWINQIKGLCICLVVIYHSVITFYPHLIGLQHPLSGLLAKCWVYFNLYLAPFRMP
VFFFISGYLIRRYIDEVDWRTSLDKRIWSIVWVLALWGVLQWQALTHLNAWLAPERELAT
SSNAAYADSFSGFVLGMVTASTSLWYLYALVVYFTLCKLLSRWKLPVLALLALASIAINF
LPLPWWGMNSVVRNMIYYSLGAWYGAELMAWMKNVNLRRIWLPTGAFAAVSVVLWFANVP
LLLSLLSIVLIMKLFYSLEQRYAVHPNNLLNVIGSNTIAIYTTHRILIEAFSLFLIGEMN
AAYWPVWAELTLVLVYPFASLLICTLAGLGVRKISTALFGDVFFSPPSTLTLSPSTR