Protein Info for EX28DRAFT_1697 in Enterobacter asburiae PDN3

Annotation: Predicted permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 37 to 53 (17 residues), see Phobius details amino acids 65 to 86 (22 residues), see Phobius details amino acids 112 to 131 (20 residues), see Phobius details amino acids 160 to 180 (21 residues), see Phobius details amino acids 210 to 235 (26 residues), see Phobius details amino acids 243 to 271 (29 residues), see Phobius details amino acids 277 to 295 (19 residues), see Phobius details amino acids 307 to 334 (28 residues), see Phobius details PF01594: AI-2E_transport" amino acids 18 to 345 (328 residues), 188.6 bits, see alignment E=9.8e-60

Best Hits

Swiss-Prot: 84% identical to YDIK_SHIFL: Putative transport protein YdiK (ydiK) from Shigella flexneri

KEGG orthology group: None (inferred from 98% identity to enc:ECL_02389)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (371 amino acids)

>EX28DRAFT_1697 Predicted permease (Enterobacter asburiae PDN3)
MVNLRQPRDVAQILLSVLFLALMIIACLWIVQPFILGFAWAATVVVATWPLLLRLQKLLF
GRRGLAVLVMTLLLFLLFIIPIALLVNSLVDSSGPVIRAISSGDLTLPDLAWLNSIPLVG
AKLYSGWHSLLEMGGSALMAKVRPYIGTTTTWFVGQAAHIGRFMMHCTLMLLFSALLYWR
GEQVALGVRHFATRLAGKRGDAAVLLAAQAVRAVALGVVVTALVQAVLGGIGLAISGVPY
ATVFTVVMLMTCLAQLGPLLVLVPCIIWLYWTGDTTWGTVLLVWSCVVGTMDNVIRPILI
RMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEIPPPGTDPDVILS
ELEELEEKNTH