Protein Info for EX28DRAFT_1684 in Enterobacter asburiae PDN3

Annotation: FeS assembly protein SufD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 TIGR01981: FeS assembly protein SufD" amino acids 133 to 409 (277 residues), 294.9 bits, see alignment E=2.8e-92 PF01458: SUFBD" amino acids 170 to 393 (224 residues), 239 bits, see alignment E=2.5e-75

Best Hits

Swiss-Prot: 82% identical to SUFD_ECOLI: FeS cluster assembly protein SufD (sufD) from Escherichia coli (strain K12)

KEGG orthology group: K09015, Fe-S cluster assembly protein SufD (inferred from 92% identity to enc:ECL_02367)

Predicted SEED Role

"Iron-sulfur cluster assembly protein SufD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (423 amino acids)

>EX28DRAFT_1684 FeS assembly protein SufD (Enterobacter asburiae PDN3)
MAGLPNSSNALQQWHRLFEAQGGTRSEQAQQHLQQMLRLGLPTRKHENWKYTPLDGLLNA
EFVTRLADLTPAQRDALAVNVDAVRLVFVDGEFRPELSDALQGSGFEIVINDDRQPLSAP
VQPEVFLHLTESLARSVTHIRVERNQRPAKPLLLMHITQGLDGDEINTAHYRHHLELAEG
AEATVIEHYVSLNETRHFTGSRLTMNVAANAQLHHVKLAFENPQSHHFGHNDILLGQDAA
AYSHSFLLGGAVLRHNTSTQLNGENTTLRINSLAMPVKSEVCDTRTWLEHNKGYCNSRQL
HKTIVSDRGRAVFNGLINVAQHAIKTDGQMTNNNLLLGRLAEVDTKPQLEIYADDVKCSH
GATVGRIDDEQMFYLRSRGIDQQAAQKMIIYAFAAELTEALNDGQLKQQVLARIGQRLPG
GEA